For the cupcake: Make cake mix according to box directions. Mix next three ingredients ( chopped apples cinnamon and nutmeg ) and add to cake mix. Follow box directions to make cupcakes .
For the icing: Combine next 5 ingredients (butter, milk, brown sugar, cinnamon and powdered sugar) with a hand mixer on high until mixed well and very creamy.
For the apple pie topping: Add all remaining ingredients to a sautee pan and bring to a boil. Lower heat and simmer for 25 minutes until apples are very soft. Let cool completely.
Decorate cooled cupcakes with icing by piping around the outer edge and leave a half dollar size opening in the center. Spoon cooled apple pie filling in center.